Index
A
|
C
|
D
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
T
|
W
A
addNode() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
C
children (taxidTools.DummyNode property)
(taxidTools.Node property)
(taxidTools.Node.DummyNode property)
(taxidTools.Node.Node property)
consensus() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
D
default_message (taxidTools.exceptions.TaxonomyError attribute)
(taxidTools.TaxonomyError attribute)
distance() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
DummyNode (class in taxidTools)
(class in taxidTools.Node)
F
filter() (taxidTools.Lineage.Lineage method)
filterRanks() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
from_json() (taxidTools.Taxonomy class method)
(taxidTools.Taxonomy.Taxonomy class method)
from_list() (taxidTools.Taxonomy class method)
(taxidTools.Taxonomy.Taxonomy class method)
from_taxdump() (taxidTools.Taxonomy class method)
(taxidTools.Taxonomy.Taxonomy class method)
G
getAncestry() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
getChildren() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
getName() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
getParent() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
getRank() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
getTaxid() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
I
insertNode() (taxidTools.DummyNode method)
(taxidTools.Node.DummyNode method)
InvalidNodeError
,
[1]
isAncestorOf() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
isDescendantOf() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
L
lca() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
Lineage (class in taxidTools.Lineage)
linne() (in module taxidTools)
(in module taxidTools.utils)
listDescendant() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
load() (in module taxidTools)
(in module taxidTools.Taxonomy)
load_ncbi() (in module taxidTools.Taxonomy)
M
module
taxidTools
taxidTools.exceptions
taxidTools.Lineage
taxidTools.Node
taxidTools.Taxonomy
taxidTools.utils
N
name (taxidTools.DummyNode property)
(taxidTools.Node property)
(taxidTools.Node.DummyNode property)
(taxidTools.Node.Node property)
Node (class in taxidTools)
(class in taxidTools.Node)
node_info (taxidTools.DummyNode property)
(taxidTools.Node property)
(taxidTools.Node.DummyNode property)
(taxidTools.Node.Node property)
P
parent (taxidTools.DummyNode property)
(taxidTools.Node property)
(taxidTools.Node.DummyNode property)
(taxidTools.Node.Node property)
prune() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
R
rank (taxidTools.DummyNode property)
(taxidTools.Node property)
(taxidTools.Node.DummyNode property)
(taxidTools.Node.Node property)
root (taxidTools.Taxonomy property)
(taxidTools.Taxonomy.Taxonomy property)
T
taxid (taxidTools.DummyNode property)
(taxidTools.Node property)
(taxidTools.Node.DummyNode property)
(taxidTools.Node.Node property)
taxidTools
module
taxidTools.exceptions
module
taxidTools.Lineage
module
taxidTools.Node
module
taxidTools.Taxonomy
module
taxidTools.utils
module
Taxonomy (class in taxidTools)
(class in taxidTools.Taxonomy)
TaxonomyError
,
[1]
W
write() (taxidTools.Taxonomy method)
(taxidTools.Taxonomy.Taxonomy method)
taxidTools
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Node module
utils module
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