Applies a processing_step on a collection object

Applies a processing_step on a collection object

Process a collection object

Applies a processing_template on a collection object

# S3 method for processing_step
process(x, collection, ...)

process(...)

# S3 method for processing_template
process(x, collection, verbose = FALSE, ...)

Arguments

x	A processing_template object
collection	a collection to process
...	further arguments passed to or from other methods(not currenctly used).
verbose	Set to TRUE to show progress

Examples

library(tidySpectR)

# Creating a masking step
stp <- 
   processing_step(
     fun = mask, 
     arglist = list(from = 5, to = Inf),
     type = "masking", 
     name = "masking")

process(stp, fa_nmr)
#> Spectra collection containing 6 entries.
#> Number of bins: 1251 
#> Limits: -2.123166e-05 5.003979 
#> Labels: conventional organic 
#> 
#> Processing:
#> Step 1 / 1 : mask 
library(tidySpectR)

template <- processing_template() %>%
            new_step(mask, list(from = 5, to = Inf), name = "mask") %>%
            new_step(bucket_uniform, list(N = 10), name = "bucket") 
process(template, fa_nmr)
#> Spectra collection containing 6 entries.
#> Number of bins: 10 
#> Limits: -2.123166e-05 5.003979 
#> Labels: conventional organic 
#> 
#> Processing:
#> Step 1 / 2 : mask 
#> Step 2 / 2 : uniform_binning